PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909654.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 397aa    MW: 45485.5 Da    PI: 9.1508
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909654.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.9e-08730126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ykt+lC  ++r G C++  +C+FaHg
  XP_010909654.1  7 YKTKLCILYQR-GRCPR-QSCNFAHG 30
                    9**********.*****.*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.16E-5435IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-11636IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648632IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021631IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-5730IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLGRKLYKTK LCILYQRGRC PRQSCNFAHG DAELRRFAGS FTGRRDNRNG DLRDKLDRRH  60
SPYRRYSPIR DARGHHSFRS HKPISNDRGS SRSRSPIKRS ERRYRKKQRM DGESDISGSL  120
KIDGAKDRKK EDKVSSHDEK DDLEEQLKQI QLDIEMLDDH KSQLEIFLEE KVDEAQKLSS  180
RIEDLESKLN KEQENCKRIT LKIKKFIKAH GRYVKAQEEL KRSQTRLQKL GDQLSSDTLK  240
TSANEEDSSV NVVSDGEPNA DGDNQINPRN DLLQKNVLSA NRRSFVDPAT SEEAKIGNSQ  300
KRERSSDVIS KSEKLTKSEG PAPYLEYNNK GADAAKKVLT SNKSLADNYK HKQGKFDSGS  360
TAPLDKYEGD DEDVDVERVD AEMVDLDINS EVEIEQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108RYRKKQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909654.10.0PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X2
TrEMBLM0S3751e-180M0S375_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26180_0011e-180(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.13e-49C3H family protein